GgaEX1051010 @ galGal3
Exon Skipping
Gene
ENSGALG00000001689 | SCAMP2
Description
NA
Coordinates
chr10:1819463-1821985:+
Coord C1 exon
chr10:1819463-1819564
Coord A exon
chr10:1820806-1820923
Coord C2 exon
chr10:1821322-1821985
Length
118 bp
Sequences
Splice sites
3' ss Seq
TACCCCGCTCTCTCTTCCAGCGG
3' ss Score
10.98
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GTCTGACAGCTCCTTCAGCTTCTTCGTCTTCTTTTTCGTCTTCTTCTGCCAAATAGCAATCTACATCATCCAGGCTGTCGGCATCCCTGGCTGGGGAGACAG
Seq A exon
CGGCTGGATTGCGGCGCTGTCGGAGCTGCATAGGAACACGGCCGTGGCCATCATCATGATGGTGGTGGCAGGGTTCTTCACGCTCTGTGCAGTCCTCTCGCTCTTCCTCCTCAAGCAG
Seq C2 exon
GTGCATTCCCTGTACCGGCGCACGGGAGCCAGCTTCCAAAGGGCTCAGGAGGAGTTTTCCCAAGGCATCCTCACCAACAGGAGCTTCCAGAACGCGGCTGCCGGGGCGGCCTCCTCAGCTGCACGCAGTGCTTTCCGGGGCAATTAGCCCTCCCCGAGGGCCACCTCTGCCTCTCTCCCCCTTCGGTTGTCAGCCCAACCTTCATTTTCTAACGATGCACTTTTCGTGGGTACCGCCTTAGCTCTGTGGTGCCGACCCCAATGAGAAGAGATCTGCATTTTAGCTTCAGTTGGCTTCGGTTTGTGACAGTTAAGTTTCCCTGCTTCGCTCCGGGACGTGGGGAGAGGGGGAGATGTTCTCTGAAGCAAATCTCTTATCTCTGTCCGGGCCGTGCAGAGCTTTCGTCTCCTCCTCCTCTCCCCCCGTCAGCAGCAGGGAGGTGAGAAGCAGGGATTTGGATTTTACTTTCTCTTTTCTATCAGCCCGTGCTATGAACAACT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000001689-'5-8,'5-7,7-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF041448=SCAMP=FE(19.1=100)
A:
PF041448=SCAMP=FE(21.9=100)
C2:
PF041448=SCAMP=PD(4.5=16.3)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTCCTTCAGCTTCTTCGTCT
R:
GCTAATTGCCCCGGAAAGCA
Band lengths:
242-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]