MmuEX6066207 @ mm10
Exon Skipping
Gene
ENSMUSG00000040188 | Scamp2
Description
secretory carrier membrane protein 2 [Source:MGI Symbol;Acc:MGI:1346518]
Coordinates
chr9:57582852-57588795:+
Coord C1 exon
chr9:57582852-57582953
Coord A exon
chr9:57587080-57587200
Coord C2 exon
chr9:57587422-57588795
Length
121 bp
Sequences
Splice sites
3' ss Seq
TCTGCGTTCTCCTTTTGTAGTGG
3' ss Score
8.86
5' ss Seq
CGGGTAAGT
5' ss Score
10.75
Exon sequences
Seq C1 exon
GTCTGACAACTCTTTCAGCTTCTTCGTGTTCTTTTTTGTATTTTTTTGTCAAATAGGGATCTACTTCATCCAGTTGATTGGCTTGCCTAACTTGGGGACCAG
Seq A exon
TGGTTGGCTTGCAGCCCTATCTACGATGAAAAATGGGCCCTTAGCTGTGACCATCATCATGATGGTAGTGGCTGGCTTCTTTACCCTCTGTGCTGGGCTTTCACTCTTCCTCCTGCAGCGG
Seq C2 exon
GTACACGCCTTCTACCGCCGAACAGGAGCCAGCTTCCAGCAGGCCCAGGAAGAGTTCTCCCAGGGTATCTTCAGCAGCAGAACCTTTCGCGGGGCTGCCTCATCTGCTGCCCGAGGAGCCTTTCAGGGGAATTAGGCTTCCCGACTCTCCTTCCCTGAGCCCTGGCCTCTCTGTCAACTGTCTTCTGAGCTGCACTTTCCTCGGGTGCCTTATGCAGTGACTACACCAGCACAGACCTGGCAGGGATTTGTCTTGTCCCTGCTCCTCCCTCAGTAGTCAGCTTTCTCCTCTACAAGAGGGAAGGAGAGGAAGGGACAAGGACTTTAAAAAAAAAAAAAACACATGGGAAAAGAAAAAATAACAAAGCTGTCTTTCCTTTTCTAATGGTGGCTTGGTCTGATTTTGTCTGGAAGCAATGGGACTGTTTTCCCTGAAAACAAATGGACTCATGTGCTTGGGATCATGGGCCAACCTGGGCTCACTGTACTGGGGATTTTCCA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000040188-'30-23,'30-20,34-23
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF041448=SCAMP=FE(19.0=100)
A:
PF041448=SCAMP=FE(22.3=100)
C2:
PF041448=SCAMP=PD(4.5=17.8)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATTGGCTTGCCTAACTTGGGG
R:
GTGCTGGTGTAGTCACTGCAT
Band lengths:
258-379
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types