HsaEX0056356 @ hg19
Exon Skipping
Gene
ENSG00000140497 | SCAMP2
Description
secretory carrier membrane protein 2 [Source:HGNC Symbol;Acc:10564]
Coordinates
chr15:75136071-75141042:-
Coord C1 exon
chr15:75140941-75141042
Coord A exon
chr15:75137814-75137934
Coord C2 exon
chr15:75136071-75137558
Length
121 bp
Sequences
Splice sites
3' ss Seq
GCCTCTTCTTCCCTTTATAGCGG
3' ss Score
11.22
5' ss Seq
CGGGTGAGT
5' ss Score
9.89
Exon sequences
Seq C1 exon
GTCCGACAACTCTTTCAGCTTCTTTGTGTTCTTCTTTGTATTTTTTTGTCAAATAGGGATCTACATCATCCAGTTGGTTGGCATCCCTGGCCTGGGGGACAG
Seq A exon
CGGTTGGATTGCAGCCCTGTCTACACTGGATAATCATTCCCTGGCCATATCAGTCATCATGATGGTGGTGGCTGGCTTCTTCACCCTCTGTGCCGTGCTCTCAGTCTTCCTCCTGCAGCGG
Seq C2 exon
GTGCACTCCCTCTACCGACGGACAGGGGCCAGCTTCCAGCAGGCCCAGGAGGAGTTTTCCCAGGGCATCTTCAGCAGCAGAACCTTCCACAGAGCTGCTTCATCTGCTGCCCAAGGAGCCTTCCAGGGGAATTAGTCCTCCTCTCTTCTCTCCCCCTCAGCCTTTCTCTCGCCTGCCTTCTGAGCTGCACTTTCCGTGGGTGCCTTATGTGGTGGTGGTTGTGCCCAGCACAGACCTGGCAGGGTTCTTGCCGTGGCTCTTCCTCCTCCCTCAGCGACCAGCTCTCCCTGGAACGGGAGGGACAGGGAATTTTTTCCCCCTCTATGTACAAAAAAAAACAAAGCTCTCTTTCCTTCTCTGGTGATGGTTTGGTAGGATTCTTTTGTCTCTGGAAGCAGTGGGACTGAAGTTCTCTTCGTCCTGTGCACACACAGACACCCCCACACAGTTGGGATCACAGGCTGACCTGGGCCCATCCCAGCTGGAGCTTTCTGCCAGGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000140497-'9-11,'9-10,11-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref, Alt. Stop)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF041448=SCAMP=FE(19.0=100)
A:
PF041448=SCAMP=FE(22.3=100)
C2:
PF041448=SCAMP=PD(4.5=17.8)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCATCCAGTTGGTTGGCATCC
R:
CACATAAGGCACCCACGGAAA
Band lengths:
248-369
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)