BtaEX0031473 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000021318 | SCAMP5
Description
Bos taurus secretory carrier membrane protein 5 (SCAMP5), mRNA. [Source:RefSeq mRNA;Acc:NM_001166565]
Coordinates
chr21:34092170-34096066:-
Coord C1 exon
chr21:34095938-34096066
Coord A exon
chr21:34093332-34093488
Coord C2 exon
chr21:34092170-34092271
Length
157 bp
Sequences
Splice sites
3' ss Seq
ACATGCTCCTGGGTCTGCAGTGA
3' ss Score
4.67
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
AGAAAGTGAACAACTTCCCACCACTGCCCAAATTCATCCCGCTAAAGCCATGTTTCTACCAAGACTTTGAGGCTGACATCCCTCCTCAGCATCTCAGCATGACCAAGCGCCTCTACTACCTCTGGATGC
Seq A exon
TGAATAGCGTCACGCTGGCCGTGAACCTGGTGGGCTGTCTCGCGTGGCTGATCGGAGGCGGGGGAGCCACCAACTTTGGCCTCGCCTTTCTCTGGCTCATCCTCTTCACACCCTGCTCCTACGTCTGCTGGTTTCGGCCCATTTACAAGGCCTTCAA
Seq C2 exon
GACCGACAGCTCCTTTAGCTTCATGGCATTCTTCTTCACCTTCATGGCCCAGCTGGTCATTAGCATCATCCAGGCCGTGGGCATCCCAGGCTGGGGTGTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000021318_MULTIEX1-1/2=C1-2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF041448=SCAMP=PU(23.7=95.5)
A:
PF041448=SCAMP=FE(29.4=100)
C2:
PF041448=SCAMP=FE(19.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TGAACAACTTCCCACCACTGC
R:
CACGGCCTGGATGATGCTAAT
Band lengths:
202-359
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development