RnoEX0078310 @ rn6
Exon Skipping
Gene
ENSRNOG00000054008 | Scamp5
Description
secretory carrier membrane protein 5 [Source:RGD Symbol;Acc:68356]
Coordinates
chr8:62225127-62230243:-
Coord C1 exon
chr8:62230115-62230243
Coord A exon
chr8:62226163-62226319
Coord C2 exon
chr8:62225127-62225228
Length
157 bp
Sequences
Splice sites
3' ss Seq
ATGTGCTCCTGGGTCTGCAGTGA
3' ss Score
5.24
5' ss Seq
CAAGTAAGT
5' ss Score
10.08
Exon sequences
Seq C1 exon
AGAAAGTGAACAACTTCCCACCATTGCCCAAATTCATCCCCCTGAAGCCATGTTTCTACCAAGACTTCGAGGCAGACATCCCTCCTCAGCATCTCAGCTTAACCAAGCGCCTCTACTACCTCTGGATGT
Seq A exon
TGAACAGCGTCACGCTGGCCGTGAACCTGGTGGGCTGTCTCGCGTGGCTGATCGGAGGCGGGGGAGCCACCAACTTTGGCCTGGCCTTTCTCTGGCTCATCCTCTTCACACCTTGCTCCTACGTCTGCTGGTTTCGGCCCATTTACAAGGCCTTCAA
Seq C2 exon
GACAGACAGCTCCTTCAGCTTCATGGCATTCTTCTTCACCTTCATGGCTCAGCTGGTCATCAGCATCATCCAGGCTGTCGGGATTCCGGGCTGGGGTGTCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000054008_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF041448=SCAMP=PU(23.7=95.5)
A:
PF041448=SCAMP=FE(29.4=100)
C2:
PF041448=SCAMP=FE(19.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AAGTGAACAACTTCCCACCAT
R:
GACACCCCAGCCCGGAATC
Band lengths:
226-383
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]