DreEX0064359 @ danRer10
Exon Skipping
Gene
ENSDARG00000040274 | scamp5b
Description
secretory carrier membrane protein 5b [Source:ZFIN;Acc:ZDB-GENE-120215-76]
Coordinates
chr18:50094231-50098828:+
Coord C1 exon
chr18:50094231-50094350
Coord A exon
chr18:50096766-50096922
Coord C2 exon
chr18:50098727-50098828
Length
157 bp
Sequences
Splice sites
3' ss Seq
ACGTATGCTCATGTTTTCAGTGT
3' ss Score
7.44
5' ss Seq
CAAGTGAGT
5' ss Score
9.1
Exon sequences
Seq C1 exon
AAAACAACTTTCCACCTCTGCCGGGCTTCATTCCTCTCAAGCCGTGTTTCCACCAGGACTTTGAGGAGATTCCTGACCAGCACCGCACATTGTGCAAGAGATTCTACTACCTGTGGATCT
Seq A exon
TGTACGGCGTGACCCTGCTGGTGAATTTCTTCGGCTGTATGGCGTGGATGTTTGGTGGCGGTGGAGTCACAAACTTTGGCATGTCGATGATTTGGGTGATTCTCTTCACACCCTGCTCTTATGTGTGCTGGTTCCGGCCCATTTACAATGCCTTCAA
Seq C2 exon
GACTGACAGCTCGTTCTACTTCATGGCGTTCTTCTTTGTCTTCATGGCACAACTTTTCATCGCTATCATTCAGGCCATCGGTATTCCAGGATGGGGTGTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000040274_MULTIEX1-2/2=C1-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF041448=SCAMP=PD(95.1=95.1)
A:
PF041448=SCAMP=FE(29.5=100)
C2:
PF041448=SCAMP=FE(19.3=100)
Main Skipping Isoform:
ENSDART00000058936fB5406
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
AACAACTTTCCACCTCTGCCG
R:
AACACCCCATCCTGGAATACC
Band lengths:
218-375
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]