BtaEX0031850 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000024394 | SEMA3D
Description
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D [Source:HGNC Symbol;Acc:HGNC:10726]
Coordinates
chr4:35563538-35651933:+
Coord C1 exon
chr4:35563538-35563737
Coord A exon
chr4:35598471-35598565
Coord C2 exon
chr4:35651743-35651933
Length
95 bp
Sequences
Splice sites
3' ss Seq
TTGATTGCTTTGTCTTCTAGAAT
3' ss Score
9.25
5' ss Seq
CAGGTGAAG
5' ss Score
6.66
Exon sequences
Seq C1 exon
CCTGGCCAGTCCTCTGTGGCCGCAGCCTCCTCGCTCCACCAGGGCCGCCCGCGGCTCCGCGGCTCAGCTAGCGCTGCCGCTCAGAGGAGGTCGCGCCGGTGTCCCGGGTCGCCGCCTCGCTCGCGCACCTCCTGCATCCCCTTCCTCTCTTCCTGAAGAGACAGCGGGCACCGAGGGAGGGAGAGAAGAGGTCGCGGCAG
Seq A exon
AATCGTGGTAACCAACTGAGTGGTCAAGTTGTTTGTATCTTATGCATACAGACTGATAGCAGCAGTTTCCTGGGACGTGCCTCGCTCCACATCAG
Seq C2 exon
ATTCAGTTAACACTGTTTGAAAGAGAACATTGTTTTCATCATGATTGTTACTAAAGATGAGAAACCAAAGTCCAGAAGCCACAATTTTCATCTTTTTCATGCCCTGATGACGATAAGCATGACCATGCTGTTTCTTCCAGTCATTAGAACTTCTAAGCAAAATATTCCACGACTCAAGCTAACCTACAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000024394_MULTIEX1-1/18=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.020
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTTCCTGAAGAGACAGCGGG
R:
TGCTTATCGTCATCAGGGCATG
Band lengths:
172-267
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development