BtaEX0031852 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000024394 | SEMA3D
Description
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D [Source:HGNC Symbol;Acc:HGNC:10726]
Coordinates
chr4:35598471-35672028:+
Coord C1 exon
chr4:35598471-35598565
Coord A exon
chr4:35651743-35651933
Coord C2 exon
chr4:35671868-35672028
Length
191 bp
Sequences
Splice sites
3' ss Seq
AGTTTTTTTCTTCTTTTTAGATT
3' ss Score
10.39
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
AATCGTGGTAACCAACTGAGTGGTCAAGTTGTTTGTATCTTATGCATACAGACTGATAGCAGCAGTTTCCTGGGACGTGCCTCGCTCCACATCAG
Seq A exon
ATTCAGTTAACACTGTTTGAAAGAGAACATTGTTTTCATCATGATTGTTACTAAAGATGAGAAACCAAAGTCCAGAAGCCACAATTTTCATCTTTTTCATGCCCTGATGACGATAAGCATGACCATGCTGTTTCTTCCAGTCATTAGAACTTCTAAGCAAAATATTCCACGACTCAAGCTAACCTACAAAG
Seq C2 exon
ACTTGCTGCTTTCAAATAGCTGTATTCCTTTTTTGGGCTCATCAGAAGGACTGGATTTCCAAACTATTCTGTTAGATGAGGAGAGGGGCAGGCTGCTCCTGGGAGCCAAGGACCACATCTTCTTGCTCAGTCTGGTTGACTTAAACAAAAATTTTAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000024394_MULTIEX1-2/18=1-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.020 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0140314=Sema=PU(7.6=63.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCGTGGTAACCAACTGAGTGG
R:
GTCAACCAGACTGAGCAAGAAGA
Band lengths:
234-425
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development