HsaEX6008761 @ hg19
Exon Skipping
Gene
ENSG00000153993 | SEMA3D
Description
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D [Source:HGNC Symbol;Acc:10726]
Coordinates
chr7:84727121-84783055:-
Coord C1 exon
chr7:84782924-84783055
Coord A exon
chr7:84751057-84751247
Coord C2 exon
chr7:84727121-84727281
Length
191 bp
Sequences
Splice sites
3' ss Seq
TTTTTTTTACTCTTTTTTAGATT
3' ss Score
12.14
5' ss Seq
AAGGTAAAT
5' ss Score
8.88
Exon sequences
Seq C1 exon
GTCTTTACACTTGGACTAGAACTGTAACATCTGCTGTCCTGGTTGCCAGGCTTTTGAACATACACTGTTGGTTCTCCTGGATCTTCACCTTACCAACTGCAGATCTTGGGACTCATCAGCCTCAATAATTAT
Seq A exon
ATTAAATTAACACCATTTGAAAGAGAACATTGTTTTCATCATGAATGCTAATAAAGATGAAAGACTTAAAGCCAGAAGCCAAGATTTTCACCTTTTTCCTGCTTTGATGATGCTAAGCATGACCATGTTGTTTCTTCCAGTCACTGGCACTTTGAAGCAAAATATTCCAAGACTCAAGCTAACCTACAAAG
Seq C2 exon
ACTTGCTGCTTTCAAATAGCTGTATTCCCTTTTTGGGTTCATCAGAAGGACTGGATTTTCAAACTCTTCTCTTAGATGAGGAAAGAGGCAGGCTGCTCTTGGGAGCCAAAGACCACATCTTTCTACTCAGTCTGGTTGACTTAAACAAAAATTTTAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000153993-'1-3,'1-2,2-3=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.039 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0140314=Sema=PU(15.2=63.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AACATCTGCTGTCCTGGTTGC
R:
CCAGACTGAGTAGAAAGATGTGGT
Band lengths:
242-433
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)