RnoEX0079275 @ rn6
Exon Skipping
Gene
ENSRNOG00000007202 | Sema3d
Description
semaphorin 3D [Source:RGD Symbol;Acc:727939]
Coordinates
chr4:19330075-19413484:-
Coord C1 exon
chr4:19413012-19413484
Coord A exon
chr4:19349683-19349870
Coord C2 exon
chr4:19330075-19330235
Length
188 bp
Sequences
Splice sites
3' ss Seq
TTCTTTTTCTGCTTCTTAAGGGT
3' ss Score
8.14
5' ss Seq
AAGGTGAGT
5' ss Score
10.47
Exon sequences
Seq C1 exon
GGTTTGCTCGCTCTGAGGGATTGCCAGCACATCAGAAGGGGCCGGGTGCTGGGGGAGGAGATTGGAGGGAGAGGTAATCCCTGGTGTTTTGAGCATCCCCTTTTTTAGAAAGACGGAGTCTCTCCCAGGACAGCTGCTGCGGTCACACCACAAACTTAAAAGCCGTCCTCCTGCTTGGAGCGTGCCTTTCCGCACCAGGCTCGCTGGACTGAGCGCCAACTGGTTGGTCGCTGTCCGTGAGGAGAGGCGCTCAGGGGACAGGAGCGCCCCCTGCCTTCCCGCCTGGCCCCAGCCAGGACCTCGGTGCTCCGCTAGGGCCGCCCGCGCTCCGCGGTTCAGCCCGAGCTGCCGCTCCAAAGAACTCGCGCCTGTGCCCCGGTCGCCGTCCTCTCGGCTTCCACTGGCTGTCCCTTCCTCTCTCCTGAGCCTGCGTTGTAAGGAAAGGAAAAGCAACAAGAGTTGCCAGCAGGAAG
Seq A exon
GGTGAAGTAACAGTGTTTGGAAGACAAAATTTTCATCATGAATGCTAATAAAGATGAGAACCCAAGGCCCAGAAGTCAAGATCTTCACCTTTTTCATGCTGGGATGATGTTAATCGTGACTGTGCTATATCTTCCTGTCACTGAAACATCTAAACAAAATATTCCACGGCTCAAGCTAACCTACAAAG
Seq C2 exon
ACTTGCTGCTCTCAAACACCTGCATTCCCTTTTTGGGTTCATCAGAAGGACTGGATTTCCAGACTCTTCTTTTGGATGAGGAGAGGGGCATACTGCTCCTAGGAGCCAAAGACCATGTCTTCCTGCTCAATCTGGTAGACTTGAACAAGAACTTTAAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000007202-'1-3,'1-2,5-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.216 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0140314=Sema=PU(7.6=63.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGCCGCTCCAAAGAACTCG
R:
ACATGGTCTTTGGCTCCTAGGA
Band lengths:
246-434
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]