GgaEX1051625 @ galGal4
Exon Skipping
Gene
ENSGALG00000006563 | SEMA3D
Description
Semaphorin-3D [Source:UniProtKB/Swiss-Prot;Acc:Q90663]
Coordinates
chr1:8177104-8238448:+
Coord C1 exon
chr1:8177104-8177191
Coord A exon
chr1:8222534-8222721
Coord C2 exon
chr1:8238288-8238448
Length
188 bp
Sequences
Splice sites
3' ss Seq
TGTTTTATTTTTGCTTCCAGATT
3' ss Score
10.08
5' ss Seq
AAGGTAAAC
5' ss Score
8.14
Exon sequences
Seq C1 exon
GCCTCCCGATCCCGATCCCGATCCCGGCACCGGCCCCGGCCCCGCACAGCGCTCAGCCCGCACCGCGCCGCCTCTCCGCTCCCCGCAG
Seq A exon
ATTAAACTTGGATTGTTTGAAGAGTGGGGAAATATTTCTCCATAGTGCAAAAAGTGCATAAGAAGAGAGCAGAATGAGAGCTTCCCAAGTACCGAATGCCTGCAGCCTGTTATCTTTAGCAATGCTGTTCTTTCCCGTCACTGGAACGTCAAAACAAAATATCCCAAGACTCAAACTTTCCTATAAAG
Seq C2 exon
ACTTGCTGCTTTCAAACAGCTGCATCCCATTCCTGGGCTCTACAGAGGGGCTAGATTTTCGAACCCTGCTGCTAGATGAGGAGAGGGGCCGGCTGCTAGTCGGGGCAAAAGACCACATCTTCCTGCTCAACTTGGTTGATTTAAACAAAAATGTAAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006563-'0-13,'0-9,7-13
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0140314=Sema=PU(19.3=63.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCTCCCGATCCCGATCCC
R:
TCAACCAAGTTGAGCAGGAAGA
Band lengths:
226-414
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]