DreEX0065041 @ danRer10
Exon Skipping
Gene
ENSDARG00000017369 | sema3d
Description
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3D [Source:ZFIN;Acc:ZDB-GENE-990715-2]
Coordinates
chr18:9213759-9242511:+
Coord C1 exon
chr18:9213759-9213995
Coord A exon
chr18:9228353-9228546
Coord C2 exon
chr18:9242351-9242511
Length
194 bp
Sequences
Splice sites
3' ss Seq
AACTGTCCACTCCATCACAGGCC
3' ss Score
6.57
5' ss Seq
AAGGTAAAG
5' ss Score
9.06
Exon sequences
Seq C1 exon
ACGCCCTCAGAGCCCTCAGCCAAACTCACAGAGTCCTGTCACACCGACAGAACAGGTCACTAAATGTTTATTTGTTCTCGTTTTTTGTGTCTCCCTTGATTAAGTTAAAGAGAGATTAGTTTTGGGACAGCGGACGCCTCTTCAAGACATTTCAAGCATGACTGTGGATAATAACGGATCTTGAAGTGTCAAACTGCGCCTCAAACTTCCAGAAACGACAGACACCAGCTCTCACAG
Seq A exon
GCCCACGGCTGCAGAAATCTCCTCGTCCATCATGAAGACTGCAGGGGAGCCGGACAGACGGAGACAGAGGAGACAGGTCAGGACGGGACGGTTTTCATGTGCTTGGTGGTCTACATCAGTGATGCTCTTCTTCTCTCTGCCTGAGGGGAACTGCATGAAGGAAAGTTTGCCAAGAGTTAAACTCGGCTACAAAG
Seq C2 exon
ATCTGATACATTCTCGAAGTGTAGTACCATTTACGGGTTCCAGCGAAGGGCAGCATTTTCAGACAGTGTTATTGGATGAGGAGAGAAGCCGATTACTGCTGGGAGCCAAAGACCACGTCTACCTACTGGACCCAGACAACATCAATAAACACCCCAAAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000017369_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref, Alt. ATG (>10 exons))
No structure available
Features
Disorder rate (Iupred):
C1=NA A=0.255 C2=0.025
Domain overlap (PFAM):
C1:
NA
A:
NO
C2:
PF0140314=Sema=PU(7.3=63.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCACACCGACAGAACAGGTC
R:
TTCGCTGGAACCCGTAAATGG
Band lengths:
247-441
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]