BtaEX0031859 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000046924 | SEMA3G
Description
sema domain, immunoglobulin domain (Ig), short basic domain, secreted, (semaphorin) 3G [Source:HGNC Symbol;Acc:HGNC:30400]
Coordinates
chr22:48999619-49001691:+
Coord C1 exon
chr22:48999619-48999792
Coord A exon
chr22:49001365-49001419
Coord C2 exon
chr22:49001531-49001691
Length
55 bp
Sequences
Splice sites
3' ss Seq
CCTGTCCCACCCACCCCCAGGAG
3' ss Score
9.93
5' ss Seq
GATGTGAGT
5' ss Score
7.77
Exon sequences
Seq C1 exon
CTACAACCAGCGGCATCGCGGGACCCAGGGCAGCTCTGCAAGCAGCTCGGTGCCCGTTCCTCAGCATGGCCCCCTCAGCCTGGGCCGTCTGCTGCCTCCTGGGGGGCCTCCTCCTCCGGGGGGGCAGTCCCAACCCCGGCCCCAGCGTGCCCCGCCTGCGGCTCTCCTTCCGAG
Seq A exon
GAGTCACTTCCCAGAAGCCCTCCAGCAGCCCTGTGGATGGAAACATTTTCCAGAT
Seq C2 exon
ACCTCCTATCTGCCAACCGTTCTGCCATCTTTCTGGGCCCCCGGGGCTCCCTGGACCTTCAGGCCCTGTACCTGGACGAGTACCGGGACCGACTGTTTCTGGGCGGCCGTGATGCCATCTATTCTCTGCGGTTGGACCAGACATGGCCAGATCCCCGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000046924-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.188 A=0.526 C2=0.242
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0140314=Sema=PU(7.6=63.0)
Main Inclusion Isoform:
ENSBTAT00000065486fB6228
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTGCCCGTTCCTCAGCATG
R:
AACGGTTGGCAGATAGGAGGT
Band lengths:
146-201
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development