HsaEX0057083 @ hg38
Exon Skipping
Gene
ENSG00000010319 | SEMA3G
Description
semaphorin 3G [Source:HGNC Symbol;Acc:HGNC:30400]
Coordinates
chr3:52442747-52445027:-
Coord C1 exon
chr3:52444913-52445027
Coord A exon
chr3:52443016-52443069
Coord C2 exon
chr3:52442747-52442907
Length
54 bp
Sequences
Splice sites
3' ss Seq
CCCGTCCCACCTGTCCCCAGGAG
3' ss Score
11.02
5' ss Seq
GATGTGAGT
5' ss Score
7.77
Exon sequences
Seq C1 exon
ATGGCCCCCTCGGCCTGGGCCATTTGCTGGCTGCTAGGGGGCCTCCTGCTCCATGGGGGTAGCTCTGGCCCCAGCCCCGGCCCCAGTGTGCCCCGCCTGCGGCTCTCCTACCGAG
Seq A exon
GAGCCATGGTCCGAAAGCCTTCCAGCACCATGTGGATGGAAACATTTTCCAGAT
Seq C2 exon
ACCTCCTGTCTGCCAACCGCTCTGCCATCTTTCTGGGCCCCCAGGGCTCCCTGAACCTCCAGGCCATGTACCTAGATGAGTACCGAGACCGCCTCTTTCTGGGTGGCCTGGACGCCCTCTACTCTCTGCGGCTGGACCAGGCATGGCCAGATCCCCGGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000010319_MULTIEX1-1/3=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
Show structural model
Features
Disorder rate (Iupred):
C1=0.143 A=0.000 C2=0.019
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF0140314=Sema=PU(30.6=63.0)
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm9)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTCCATGGGGGTAGCTCTGG
R:
CTAGGTACATGGCCTGGAGGT
Band lengths:
142-196
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development