BtaEX0031879 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000001941 | SEMA4D
Description
Bos taurus sema domain, immunoglobulin domain (Ig), transmembrane domain (TM) and short cytoplasmic domain, (semaphorin) 4D (SEMA4D), mRNA. [Source:RefSeq mRNA;Acc:NM_001098160]
Coordinates
chr8:90136712-90225004:+
Coord C1 exon
chr8:90136712-90136824
Coord A exon
chr8:90216564-90216623
Coord C2 exon
chr8:90224674-90225004
Length
60 bp
Sequences
Splice sites
3' ss Seq
TTGTTTCCTATTATTTTCAGAGC
3' ss Score
8.68
5' ss Seq
AAGGTAAAA
5' ss Score
8.38
Exon sequences
Seq C1 exon
CTCCGCGCCGGGCCTCCGAGCCGGTCGCCTCCGCCTCTGCCGCCGCCATTCCTGCGCCCGCGCTCGCCTGGCCCGGCACCGCGGGGCCGCGCGGCCAGGACACGCCGCGCCAG
Seq A exon
AGCCAAGATTGCTGAAGCCTTCTAGAAACAATTGGAAGTTTCGAGAAGGGGCAAGATAAG
Seq C2 exon
AATTTCTTCAGAAGGCTGTAGAGCAGCACAGCCTTTCACGTTTGCACTGGTGGAGCAGCCGACCTCACCCAGAGTGAGTGCTGAGAAATGCGGGGCCTCCGGGCTCGTGCCACCCACCAGCTCCGGGCTGCACTGCGGCTCTGAGCGGCCACCACCTAGACCCCCTCTGTGGGCTCCGCTGCCCGCCAGCATTTGCTGCTGAAGCCCCCGCTGAAGCCCCGACCGATGAGGATGTGTGGCCCTGTTGGGGGGCTGCTCACCGCCCTCGCCGTGGTGTTTGGGACGGCTGTGGCATTTGCTCCCGTACCTAGGATCACTTGGGAGCACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000001941_MULTIEX1-3/5=C1-4
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development