HsaEX0057112 @ hg38
Exon Skipping
Gene
ENSG00000187764 | SEMA4D
Description
semaphorin 4D [Source:HGNC Symbol;Acc:HGNC:10732]
Coordinates
chr9:89405351-89455953:-
Coord C1 exon
chr9:89455888-89455953
Coord A exon
chr9:89418056-89418118
Coord C2 exon
chr9:89405351-89405699
Length
63 bp
Sequences
Splice sites
3' ss Seq
GTTTCCCATTATTTTCACAGCAA
3' ss Score
6.41
5' ss Seq
CAGGTAAAA
5' ss Score
8.59
Exon sequences
Seq C1 exon
ACTCTGCTAACACCAGATAGTGGAAAGAAACCATGTGCTGAAATGTTTGACGACACTGATGGTTTG
Seq A exon
CAAAGATTTCTGAAGACGTCTTTCTAGAAATGACTGGAAAGTTTCAAGAGGCATAAGATACAG
Seq C2 exon
CATTTCTTCTGAGGCCCTGAAGAAGTATCAAGTGGGCTTTGACATTGCGGTGGTGAGAGCGACCCCTCCTCACCTGGAGAACTGGGAAATGTGGATTCTCAGGGACCGCGCTGTTCACGAGCTCCAGGCTGTGCTGCTGGCCCTGGTCCTGGGGCGCTGAGCCGCATCTGCAATAGCACACCTGCCCGGCCACCTGCTGCCGTGAGCCTTTGCTGCTGAAGCCCCTGGGGTCGCCTCTACCTGATGAGGATGTGCACCCCCATTAGGGGGCTGCTCATGGCCCTTGCAGTGATGTTTGGGACAGCGATGGCATTTGCACCCATACCCCGGATCACCTGGGAGCACAGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000187764_MULTIEX1-5/9=3-6
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=0.000
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGTGGAAAGAAACCATGTGCTGA
R:
TTCCCAGTTCTCCAGGTGAGG
Band lengths:
136-199
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development