BtaEX0032090 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000007329 | SETDB2
Description
SET domain, bifurcated 2 [Source:HGNC Symbol;Acc:HGNC:20263]
Coordinates
chr12:19111394-19118272:+
Coord C1 exon
chr12:19111394-19111409
Coord A exon
chr12:19117154-19117231
Coord C2 exon
chr12:19118147-19118272
Length
78 bp
Sequences
Splice sites
3' ss Seq
AATATTGCCTGCCACTTCAGAAG
3' ss Score
3.44
5' ss Seq
AAGGTAGAA
5' ss Score
6.33
Exon sequences
Seq C1 exon
ATGGGAGAAAAAAATG
Seq A exon
AAGATAATGAGTGCTGCCTGCCATCAAGCCAACATCTACATGCAGCCCTAGTGGCACTCCCTGAGGAGAATTCAGAAG
Seq C2 exon
GTGATGCAAAAAGTTTCTGGATGGAGCTGGAAGATGATGGGAAAGTGGATTTCATATTTGAACAAGTGCAAAATGTGCTGCAGTCACTGAAACAAAAGATCAAAGATGGGTCTGCCACAAATAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000007329_CASSETTE1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (No Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.583 A=0.444 C2=0.128
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSBTAT00000009641fB6277
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development