BtaEX0032096 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000024822 | SETX
Description
senataxin [Source:HGNC Symbol;Acc:HGNC:445]
Coordinates
chr11:102389834-102391057:-
Coord C1 exon
chr11:102390908-102391057
Coord A exon
chr11:102390174-102390512
Coord C2 exon
chr11:102389834-102390059
Length
339 bp
Sequences
Splice sites
3' ss Seq
GGTTACCCACTGTTTGCTAGAAT
3' ss Score
2.74
5' ss Seq
AATGTATGT
5' ss Score
5.87
Exon sequences
Seq C1 exon
GTTCAAGGACGCCCACAGAAGACACAGAGCATCATCATCTTAGAGTCACACATCATTTGCTGCACCCTGAGCACGAGTGGTGGCTTGCTGCTCGAGGCTGCTTTCCGTGGGCAAGGAGGCGTCCCCTTCAGCTGTGTCATCGTTGATGAG
Seq A exon
AATCTAGAGCCAGAAGACAAAAAGAGATGGAAAATGAAGAATAAAGAACCCGTTCAGGAGATCCGAGATCCACTATTCACCAAAATGAAGGAATAGAAAAGATGATGAAATAGTTGAAGGAAATATTGCCAAATTGAAGTGAAGCTTGAGGGTTGCAAATGTGAAGTGGCCTCCTGAGGAGGAGAGCGGGCGGGCGGGTGGGGCACGCCGAAACACAACCCTGTCGGGCACACGTCCAGCGGGAACAGACAGACCGACCGGGGACAGGACTTGGCCCTTGCAGTTTATGGCTGCTTCCCAAGTGATAGTGGCACCTGAAAGATGGCTGACTTCCACAAT
Seq C2 exon
AAGGAGAAGGTGTACGTTTTTGAATGGCTAAGACTTTCCTTATGAATTACACTGTATATGGATAAAAAGTAACAGAGAAAACTGTGACTGTATCTCCGTTCTATACTTTCTTACCAAGGCTGGACAGTCTTGTGAAGTTGAAACTCTTACTCCGCTCATCCATCGTTGCAACAAGCTTGTCCTCGTAGGAGACCCTAAGCAGCTCCCTCCCACAGTCATTTCCGTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000024822-'27-27,'27-26,28-27
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.020 A=0.452 C2=0.000
Domain overlap (PFAM):
C1:
PF130861=AAA_11=FE(17.1=100)
A:
PF130861=AAA_11=PD(0.1=0.0)
C2:
PF130861=AAA_11=FE(12.2=100)
Main Inclusion Isoform:
ENSBTAT00000042924fB6280
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTTCAAGGACGCCCACAGAAG
R:
GCTGCTTAGGGTCTCCTACGA
Band lengths:
353-692
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development