BtaEX0032292 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013857 | SH2D3A
Description
Bos taurus SH2 domain containing 3A (SH2D3A), mRNA. [Source:RefSeq mRNA;Acc:NM_001205669]
Coordinates
chr7:18951408-18957932:+
Coord C1 exon
chr7:18951408-18951757
Coord A exon
chr7:18957154-18957266
Coord C2 exon
chr7:18957451-18957932
Length
113 bp
Sequences
Splice sites
3' ss Seq
TTTCAATTTTGTGTGGTCAGTGC
3' ss Score
5.28
5' ss Seq
TTGGTAGGT
5' ss Score
7.03
Exon sequences
Seq C1 exon
AAGGCCGAGGACCTTCTCCAGCAAGATGGTGACTTCTTAGTTCGTGCGTCCAAGTCCCGTGGGGGCCACCCTGTCATCTCCTGCCGCTGGCGGGGCTCAGCCCTGCACTTCGAGGTGCTTCGTGTGGCCCTGAGGCCTCGGCCAGGCCGGCCCACAGCCCTCTTTCAGCTAGAGGATGAGCGTTTCCCCAGCCTGCCTGCCCTGGTTCGCAGCTATGTGATTGGCCAGCGTCCACTGTCCCAAGCCACAGGGGCTGTGGCCTCCAGGCCAGTGCCACGGCAAGGACTAATTCGACGCAGCTTTAGTGAGGACACCCTTCCAGACGACCCGGCTCGCACAGAGCCGCTCAG
Seq A exon
TGCTTACCATCTTCAATCAGAGGAGCAAAAAGGAAGAGTTCAGACTTAAAATGTAGTATTCAGAATTGGCAGAACTACATCCATGTCAGAGAAAGTTCATTTTCAGACCATTG
Seq C2 exon
GAGCCTCCACTGTACCTGCATCTGGCCTGCCTCGGACAGGTAGTGACCCCGTGATACTAAAGACCCCAGTTCCCTTGGGGTCCGTTGCTGACAGTCTCAGGGCCTCTGATGGGCAGCTTCATGCCAAGGCCCCAACCAAGCCACCTCGAACACCCTCATTGCTACTGCCTGATGCCTCTGGACGCCCCCCGACGTACTGTGAGCTGGTGCCCCGAGTGCTCAGGTTCCAAGGACCACCCCCTGGCCACAGCTGCCCAGAGTCAGAGGTGCCCTGGTGGGAAGCCGAGGAGGAGAAAGAGGAGGACAGATGTTTTGCAAGACCACAGGCTGAGGTCTCTTTCTGTCTCCCTGACACCCCCTCCTGCCTGCTGGGCTCCCAGAATCGGCCTCTGGAACCCGAAGTCCTGCATACTCTCCGTGGCCTGTTCCTGGAACACCATCCTGGGAGCACAGCTCTCCACCTGCTATTGGTAGACTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013857_MULTIEX2-2/2=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.410 A=NA C2=0.547
Domain overlap (PFAM):
C1:
PF0001719=SH2=PD(87.7=60.7)
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAAGGACTAATTCGACGCA
R:
CAGGCAGTAGCAATGAGGGTG
Band lengths:
244-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development