BtaEX0032291 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000013857 | SH2D3A
Description
Bos taurus SH2 domain containing 3A (SH2D3A), mRNA. [Source:RefSeq mRNA;Acc:NM_001205669]
Coordinates
chr7:18951408-18957932:+
Coord C1 exon
chr7:18951408-18951757
Coord A exon
chr7:18952167-18952243
Coord C2 exon
chr7:18957451-18957932
Length
77 bp
Sequences
Splice sites
3' ss Seq
TCCCTCCCTCTGTCCCCCAGGGA
3' ss Score
11.36
5' ss Seq
CAGGTAAAG
5' ss Score
9.65
Exon sequences
Seq C1 exon
AAGGCCGAGGACCTTCTCCAGCAAGATGGTGACTTCTTAGTTCGTGCGTCCAAGTCCCGTGGGGGCCACCCTGTCATCTCCTGCCGCTGGCGGGGCTCAGCCCTGCACTTCGAGGTGCTTCGTGTGGCCCTGAGGCCTCGGCCAGGCCGGCCCACAGCCCTCTTTCAGCTAGAGGATGAGCGTTTCCCCAGCCTGCCTGCCCTGGTTCGCAGCTATGTGATTGGCCAGCGTCCACTGTCCCAAGCCACAGGGGCTGTGGCCTCCAGGCCAGTGCCACGGCAAGGACTAATTCGACGCAGCTTTAGTGAGGACACCCTTCCAGACGACCCGGCTCGCACAGAGCCGCTCAG
Seq A exon
GGATAGGAAGCGGAGTGATAGTCAGCCCGCAGGTTTGGAGCATATGTGGCGGTCACCAGAAGACCCTCCTGGACCAG
Seq C2 exon
GAGCCTCCACTGTACCTGCATCTGGCCTGCCTCGGACAGGTAGTGACCCCGTGATACTAAAGACCCCAGTTCCCTTGGGGTCCGTTGCTGACAGTCTCAGGGCCTCTGATGGGCAGCTTCATGCCAAGGCCCCAACCAAGCCACCTCGAACACCCTCATTGCTACTGCCTGATGCCTCTGGACGCCCCCCGACGTACTGTGAGCTGGTGCCCCGAGTGCTCAGGTTCCAAGGACCACCCCCTGGCCACAGCTGCCCAGAGTCAGAGGTGCCCTGGTGGGAAGCCGAGGAGGAGAAAGAGGAGGACAGATGTTTTGCAAGACCACAGGCTGAGGTCTCTTTCTGTCTCCCTGACACCCCCTCCTGCCTGCTGGGCTCCCAGAATCGGCCTCTGGAACCCGAAGTCCTGCATACTCTCCGTGGCCTGTTCCTGGAACACCATCCTGGGAGCACAGCTCTCCACCTGCTATTGGTAGACTGCCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000013857_MULTIEX2-1/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.410 A=1.000 C2=0.547
Domain overlap (PFAM):
C1:
PF0001719=SH2=PD(87.7=60.7)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGCAAGGACTAATTCGACGCA
R:
CTGAGACTGTCAGCAACGGAC
Band lengths:
173-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development