DreEX0007860 @ danRer10
Exon Skipping
Gene
ENSDARG00000086539 | SH2D3A
Description
SH2 domain containing 3A [Source:HGNC Symbol;Acc:HGNC:16885]
Coordinates
chr1:58251818-58254593:-
Coord C1 exon
chr1:58254319-58254593
Coord A exon
chr1:58252175-58252257
Coord C2 exon
chr1:58251818-58252089
Length
83 bp
Sequences
Splice sites
3' ss Seq
TGTGTGTGTGTGTGTGGTAGGAG
3' ss Score
8.22
5' ss Seq
CAGGTACAC
5' ss Score
7.29
Exon sequences
Seq C1 exon
GGTTACACGCGGGAGCTGTTTCAGTTCGAGAACGATCAGTTCGATAACATTCCAGCGTTAATTCGCTTCCACGTCGGCGGCCGGCGTCCGATATCACACTCCACTGGAGCCGTCATCTTCCAGCCAATCACACGCACTCTGCCTCTACGCATCATCAGCGAGCGGCAGGCTGCCAGATCAAGCTCCGCCCACCTGATGCGGAGCCAGAGCAAGAGGCGGAGCCTGAGTTCTTCTCAGAAGGACACGCTGCAGGTCAACACCAACAACCTGCTCAG
Seq A exon
GAGTGGCAGTCAACCTGCTAATCTGGAGACAGTGGGGAGACCGTTTCTACAGTCTGCACAATCTGACAGTAACCTCCGCACAG
Seq C2 exon
GTGTACCTCAGAGCTGTCAGTCACAGGACTCCGACCCCGCCCCCGTCTCTCCAGTGTTCCGCACAGGAAGTGAGCCTGTCCTCAGTCCTGCTGCATCCTGTGCCACTCCCGCCGGCCAGTCAGCTCTGGGCGTTTCTCCTCTGTGTGGCTCTGATGGTCAGCTGCATTCACGAGCTCCACCCAAACCCCTGCGCATCTCCATCATCTTCAGCCCCACGCAAACTGACCCGGAGTCAGATCCTGCCGACGTCTATGGAGAGCTGGTGCCGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000086539-'8-8,'8-7,9-8
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.380 A=0.966 C2=0.978
Domain overlap (PFAM):
C1:
PF0001719=SH2=PD(28.4=25.0)
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCAACACCAACAACCTGCT
R:
GAGCCACACAGAGGAGAAACG
Band lengths:
175-258
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]