BtaEX0032320 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016813 | SH3D19
Description
SH3 domain containing 19 [Source:HGNC Symbol;Acc:HGNC:30418]
Coordinates
chr17:6619796-6632655:+
Coord C1 exon
chr17:6619796-6619836
Coord A exon
chr17:6629207-6629275
Coord C2 exon
chr17:6632613-6632655
Length
69 bp
Sequences
Splice sites
3' ss Seq
GCGTGCTTTCTTTCCTACAGTAG
3' ss Score
8.25
5' ss Seq
TTGGTAGGC
5' ss Score
5.85
Exon sequences
Seq C1 exon
CCAAGGACCCTTGTCATCAATTAGAGCAGTAATCAAGAGAT
Seq A exon
TAGCTTGCCGTTCCCTCCTCCGGTGGACCGCATTTTGTCAGAACTCTTCGCTGTGACTCGTCCGTGTTG
Seq C2 exon
CTTCTCGGACTTCTATTCAGAGTGAGCTTCATCGAGATAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016813_MULTIEX1-1/3=C1-3
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGACCCTTGTCATCAATTAGAGCA
R:
TCCTATCTCGATGAAGCTCACTCT
Band lengths:
79-148
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development