BtaEX0032321 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016813 | SH3D19
Description
SH3 domain containing 19 [Source:HGNC Symbol;Acc:HGNC:30418]
Coordinates
chr17:6619796-6632655:+
Coord C1 exon
chr17:6619796-6619836
Coord A exon
chr17:6631208-6631248
Coord C2 exon
chr17:6632613-6632655
Length
41 bp
Sequences
Splice sites
3' ss Seq
CCCTTCTTTTTTTCCTTTAGCAT
3' ss Score
10.92
5' ss Seq
GAGGTATGT
5' ss Score
9.81
Exon sequences
Seq C1 exon
CCAAGGACCCTTGTCATCAATTAGAGCAGTAATCAAGAGAT
Seq A exon
CATTCATGAATAGTACACAGCAAAAATGCCCCGTGGAAGAG
Seq C2 exon
CTTCTCGGACTTCTATTCAGAGTGAGCTTCATCGAGATAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016813_MULTIEX1-2/3=C1-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGACCCTTGTCATCAATTAGAGC
R:
TCTCGATGAAGCTCACTCTGA
Band lengths:
76-117
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development