GgaEX0026757 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr4:34406068-34413015:-
Coord C1 exon
chr4:34412975-34413015
Coord A exon
chr4:34406820-34406860
Coord C2 exon
chr4:34406068-34406110
Length
41 bp
Sequences
Splice sites
3' ss Seq
CCCTTCTTTTTTTCCTCTAGTAC
3' ss Score
10.58
5' ss Seq
GAGGTATGT
5' ss Score
9.81
Exon sequences
Seq C1 exon
CCAAGGACCTTTGTCATCCATAAGAGCAGCAATCAAGAGAT
Seq A exon
TACTCATGAATAGTGCACATCAAAAATGCCCCGTGGAAGAG
Seq C2 exon
CTTCTCGGACTTCTAGCCATAGTGAACAGCAGAGGGATAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023360-'9-7,'9-5,10-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.756 A=0.000 C2=0.667
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCAAGGACCTTTGTCATCCAT
R:
CTTCTATCCCTCTGCTGTTCACT
Band lengths:
84-125
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]