GgaEX0026755 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr4:34406068-34432242:-
Coord C1 exon
chr4:34432203-34432242
Coord A exon
chr4:34412975-34413015
Coord C2 exon
chr4:34406068-34406110
Length
41 bp
Sequences
Splice sites
3' ss Seq
TTTATTTTTTCTTTATTAAGCCA
3' ss Score
4.75
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
ATCGCTCTGAAAGAAATAAACCAGACTGCCGCTCTTCAGG
Seq A exon
CCAAGGACCTTTGTCATCCATAAGAGCAGCAATCAAGAGAT
Seq C2 exon
CTTCTCGGACTTCTAGCCATAGTGAACAGCAGAGGGATAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023360-'6-7,'6-4,9-7
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.756 C2=0.667
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCGCTCTGAAAGAAATAAACCAGAC
R:
CCCTCTGCTGTTCACTATGGC
Band lengths:
76-117
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]