HsaEX0057985 @ hg19
Exon Skipping
Gene
ENSG00000109686 | SH3D19
Description
SH3 domain containing 19 [Source:HGNC Symbol;Acc:30418]
Coordinates
chr4:152100507-152147238:-
Coord C1 exon
chr4:152147199-152147238
Coord A exon
chr4:152108575-152108615
Coord C2 exon
chr4:152100507-152100549
Length
41 bp
Sequences
Splice sites
3' ss Seq
AGTTTTCTTTCTTTTTCTAGCCA
3' ss Score
8.07
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
ATCGCAACGAACGAAATAAACCAGAACATCGTTCTTCAAG
Seq A exon
CCAAGGACCCTTGTCATCCATTAGAGCGGTAATCAAGAGAT
Seq C2 exon
CTTCTCGGACTTCTATTCAGAGTGAACTTCATCGAGATAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000109686_MULTIEX2-3/4=2-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGCAACGAACGAAATAAACCA
R:
TCTCGATGAAGTTCACTCTGAAT
Band lengths:
76-117
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)