HsaEX0057985 @ hg38
Exon Skipping
Gene
ENSG00000109686 | SH3D19
Description
SH3 domain containing 19 [Source:HGNC Symbol;Acc:HGNC:30418]
Coordinates
chr4:151179355-151226086:-
Coord C1 exon
chr4:151226047-151226086
Coord A exon
chr4:151187423-151187463
Coord C2 exon
chr4:151179355-151179397
Length
41 bp
Sequences
Splice sites
3' ss Seq
AGTTTTCTTTCTTTTTCTAGCCA
3' ss Score
8.07
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
ATCGCAACGAACGAAATAAACCAGAACATCGTTCTTCAAG
Seq A exon
CCAAGGACCCTTGTCATCCATTAGAGCGGTAATCAAGAGAT
Seq C2 exon
CTTCTCGGACTTCTATTCAGAGTGAACTTCATCGAGATAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000109686_MULTIEX2-4/5=3-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=0.978 C2=0.500
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCGCAACGAACGAAATAAACCA
R:
TCTCGATGAAGTTCACTCTGAAT
Band lengths:
76-117
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development