HsaEX0057986 @ hg38
Exon Skipping
Gene
ENSG00000109686 | SH3D19
Description
SH3 domain containing 19 [Source:HGNC Symbol;Acc:HGNC:30418]
Coordinates
chr4:151179355-151187463:-
Coord C1 exon
chr4:151187423-151187463
Coord A exon
chr4:151181689-151181729
Coord C2 exon
chr4:151179355-151179397
Length
41 bp
Sequences
Splice sites
3' ss Seq
CCCTTCTTTTTTTCCCTTAGCAC
3' ss Score
9.93
5' ss Seq
GAGGTATGT
5' ss Score
9.81
Exon sequences
Seq C1 exon
CCAAGGACCCTTGTCATCCATTAGAGCGGTAATCAAGAGAT
Seq A exon
CACTCATGAATAGTACACAGCAAAAATGCCCCGTGGAAGAG
Seq C2 exon
CTTCTCGGACTTCTATTCAGAGTGAACTTCATCGAGATAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000109686_MULTIEX2-5/5=4-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
In the CDS, with uncertain impact
No structure available
Features
Disorder rate (Iupred):
C1=0.978 A=0.357 C2=0.500
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTTGTCATCCATTAGAGCGG
R:
TTCTATCTCGATGAAGTTCACTCTGA
Band lengths:
76-117
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development