GgaEX0026755 @ galGal4
Exon Skipping
Gene
ENSGALG00000010081 | SH3D19
Description
SH3 domain containing 19 [Source:HGNC Symbol;Acc:HGNC:30418]
Coordinates
chr4:32719400-32745573:-
Coord C1 exon
chr4:32745534-32745573
Coord A exon
chr4:32726307-32726347
Coord C2 exon
chr4:32719400-32719442
Length
41 bp
Sequences
Splice sites
3' ss Seq
TTTATTTTTTCTTTATTAAGCCA
3' ss Score
4.75
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
ATCGCTCTGAAAGAAATAAACCAGACTGCCGCTCTTCAGG
Seq A exon
CCAAGGACCTTTGTCATCCATAAGAGCAGCAATCAAGAGAT
Seq C2 exon
CTTCTCGGACTTCTAGCCATAGTGAACAGCAGAGGGATAGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010081_MULTIEX2-3/4=2-C2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCGCTCTGAAAGAAATAAACCAGAC
R:
CCCTCTGCTGTTCACTATGGC
Band lengths:
76-117
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]