RnoEX6010026 @ rn6
Exon Skipping
Gene
ENSRNOG00000011752 | Sh3d19
Description
SH3 domain containing 19 [Source:RGD Symbol;Acc:1304885]
Coordinates
chr2:185343920-185390891:+
Coord C1 exon
chr2:185343920-185343959
Coord A exon
chr2:185384780-185384820
Coord C2 exon
chr2:185390849-185390891
Length
41 bp
Sequences
Splice sites
3' ss Seq
TTCTCTCTCTCTTTTTCTAGCCA
3' ss Score
10.71
5' ss Seq
GATGTAAGT
5' ss Score
9.11
Exon sequences
Seq C1 exon
ATCGCAACGAGAGACATAAGCCAGAGCATCGTTCCTCAAG
Seq A exon
CCAAGGACCCCTGTCATCCATTAGAGCGGTAATCAAGAGAT
Seq C2 exon
CTTCTCGGACCTGTATTCAAAGTGAACTTCATCGGGATAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000011752-'6-14,'6-11,9-14=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CGCAACGAGAGACATAAGCCA
R:
CTCCTATCCCGATGAAGTTCACT
Band lengths:
81-122
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]