GgaEX0026754 @ galGal3
Exon Skipping
Description
NA
Coordinates
chr4:34412975-34432242:-
Coord C1 exon
chr4:34432203-34432242
Coord A exon
chr4:34424665-34424969
Coord C2 exon
chr4:34412975-34413015
Length
305 bp
Sequences
Splice sites
3' ss Seq
ATTATTCTTTTGTTCCAAAGATA
3' ss Score
6.57
5' ss Seq
CAGGTCAGT
5' ss Score
8.94
Exon sequences
Seq C1 exon
ATCGCTCTGAAAGAAATAAACCAGACTGCCGCTCTTCAGG
Seq A exon
ATATGGCAATGACAAACAGCACATGAAATTCATCTGATTGGTGGGAAATGGGGCTGGAAGAGAATTCTTTCTAAAAGCATTTGTAACAGTCTCAAACAGTAACTCTTCTAGAAGGAGGAGGAACTGCGAAGGGAAGTCTATGGGATGCATCTCAGGGCTGAAGCGGCAGACTTGGCTCCTTGTAAACATTCATCTCAGAAGAAATAGTGGCTCGGGTTCTTCCTGAAAGAAACTTCTGTTGGGGCTGACACACGAACTTTGATTTATTTCCCGAAGGATTTGTGTAGGTTTCTGGTTGGACTCAG
Seq C2 exon
CCAAGGACCTTTGTCATCCATAAGAGCAGCAATCAAGAGAT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000023360-'6-4,'6-2,7-4
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=1.000 A=1.000 C2=0.756
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Human
(hg19)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Cow
(bosTau6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]