BtaEX0032849 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016762 | SLC25A12
Description
Bos taurus solute carrier family 25 (mitochondrial carrier, Aralar), member 12 (SLC25A12), mRNA. [Source:RefSeq mRNA;Acc:NM_001101194]
Coordinates
chr2:24715049-24723421:+
Coord C1 exon
chr2:24715049-24715164
Coord A exon
chr2:24721928-24722058
Coord C2 exon
chr2:24723282-24723421
Length
131 bp
Sequences
Splice sites
3' ss Seq
GAAATACTGTTGCTATTTAGGCC
3' ss Score
6.18
5' ss Seq
CTGGTAGGA
5' ss Score
6.77
Exon sequences
Seq C1 exon
GTTGATCTCCTATCAAGAGTTTTTGGCATTTGAATCTGTATTATGTGCTCCAGATTCCATGTTCATAGTGGCTTTCCAATTGTTTGACAAGAGTGGAAATGGAGAGGTGACATTTG
Seq A exon
GCCAGAAATAGATGCTACATTCCATTTGAAAGAAAAGATGAGAATCCCATCTCCCCAGTGACATCCAATGCCGCCTTCCAACTGACCGATCGCTGTGACCTATTCAGAGCTGTCGTGTTGAGTCCAAACTG
Seq C2 exon
AAAATGTCAAAGAAATTTTTGGACAGACTACTATTCACCATCATATCCCTTTTAATTGGGACTGTGAATTTATCCGGCTACATTTTGGGCATAATCGGAAGAAGCACCTTAACTACACAGAATTCACACAGTTTCTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016762_MULTIEX1-2/2=C1-C2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.004 A=0.333 C2=0.000
Domain overlap (PFAM):
C1:
PF134991=EF-hand_7=PD(14.5=25.0),PF0003627=EF-hand_1=PU(65.5=47.5)
A:
PF0003627=EF-hand_1=PD(4.8=25.0)
C2:
PF0003627=EF-hand_1=PD(31.0=19.1),PF134991=EF-hand_7=PU(42.9=51.1)
Main Inclusion Isoform:
ENSBTAT00000022292fB6430
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Mouse
(mm10)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGATCTCCTATCAAGAGTTTTTGGCA
R:
TGTGAATTCTGTGTAGTTAAGGTGCT
Band lengths:
242-373
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development