BtaEX0032992 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016775 | SLC27A1
Description
Bos taurus solute carrier family 27 (fatty acid transporter), member 1 (SLC27A1), mRNA. [Source:RefSeq mRNA;Acc:NM_001033625]
Coordinates
chr7:5545318-5570056:-
Coord C1 exon
chr7:5569889-5570056
Coord A exon
chr7:5547281-5547363
Coord C2 exon
chr7:5545318-5545712
Length
83 bp
Sequences
Splice sites
3' ss Seq
CTTGTTTTTAAAAACTGCAGATG
3' ss Score
6.82
5' ss Seq
CAGGTCCAG
5' ss Score
-0.26
Exon sequences
Seq C1 exon
GATGCGAGCTCCGGGTGCAGGTTCGGCTTCCGTGGCCTCTCTGGTGCTGTTATGGTTGCTCGGACTGCCGTGGACCTGGAGCACAGCGGCGGCGCTCGGCGTGTACGTGGGCGGCGGCGGCTGGCGTTTCCTGCGCATCGTCTGCAAAACCGCAAGGCGGGACCTCTT
Seq A exon
ATGCAGGTGGCTGTGTGGATCCATCCCCTCTTCTAACAGACCTTCCTGGCCCACCCAGGACCCTGTCTTCCTCCATTCCCCAG
Seq C2 exon
CGGCCTTTCCGTGCTGATACGCGTGCGCCTGGAGCTGCGGCGGCACCAGCGCGCGCGCCACACCATCCCACAGATCTTCCAGGCGGTGGTTCAGCGGCAGCCCGAGCGCCTGGCGCTAGTGGACGCGGGCAGCGGTGCGTGCTGGACCTTCGCGCAGCTGGATGCCTACTCCAACGCTGTGGCCAACTTGTTCCGCCGGCTGGGCTTCGCGCCGGGCGACGTGGTGGCCATCTTCATGGAGGGCCGGCCTGAGTTTGTGGGGCTTTGGCTGGGCCTGGCCAAGGCAGGCGTGGAGGCCGCGCTGCTCAACGTGAACCTGCGGCGGGAGCCCCTGGCCTTCTGCCTGGGCACCTCGGGCGCCAAAGCCCTGGTCTTCGGAGGGGAGCTGGCGGCGG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016775_MULTIEX2-2/8=1-3
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=PU(12.8=69.2)
A:
NO
C2:
PF0050123=AMP-binding=PU(24.4=79.7)
Main Inclusion Isoform:
ENSBTAT00000022311fB6457
Other Inclusion Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Mouse
(mm9)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCCGTGGCCTCTCTGGT
R:
CACGCGTATCAGCACGGAAAG
Band lengths:
167-250
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development