BtaEX0032993 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000016775 | SLC27A1
Description
Bos taurus solute carrier family 27 (fatty acid transporter), member 1 (SLC27A1), mRNA. [Source:RefSeq mRNA;Acc:NM_001033625]
Coordinates
chr7:5537542-5570056:-
Coord C1 exon
chr7:5569889-5570056
Coord A exon
chr7:5545318-5545712
Coord C2 exon
chr7:5537542-5537751
Length
395 bp
Sequences
Splice sites
3' ss Seq
TTCCTCATCCCCCCTCCCAGCGG
3' ss Score
7.28
5' ss Seq
CGGGTGAGG
5' ss Score
8.48
Exon sequences
Seq C1 exon
GATGCGAGCTCCGGGTGCAGGTTCGGCTTCCGTGGCCTCTCTGGTGCTGTTATGGTTGCTCGGACTGCCGTGGACCTGGAGCACAGCGGCGGCGCTCGGCGTGTACGTGGGCGGCGGCGGCTGGCGTTTCCTGCGCATCGTCTGCAAAACCGCAAGGCGGGACCTCTT
Seq A exon
CGGCCTTTCCGTGCTGATACGCGTGCGCCTGGAGCTGCGGCGGCACCAGCGCGCGCGCCACACCATCCCACAGATCTTCCAGGCGGTGGTTCAGCGGCAGCCCGAGCGCCTGGCGCTAGTGGACGCGGGCAGCGGTGCGTGCTGGACCTTCGCGCAGCTGGATGCCTACTCCAACGCTGTGGCCAACTTGTTCCGCCGGCTGGGCTTCGCGCCGGGCGACGTGGTGGCCATCTTCATGGAGGGCCGGCCTGAGTTTGTGGGGCTTTGGCTGGGCCTGGCCAAGGCAGGCGTGGAGGCCGCGCTGCTCAACGTGAACCTGCGGCGGGAGCCCCTGGCCTTCTGCCTGGGCACCTCGGGCGCCAAAGCCCTGGTCTTCGGAGGGGAGCTGGCGGCGG
Seq C2 exon
GTGGTCCAGTACATCGGGGAGATCTGCCGCTACCTGCTGAAGCAGCCGGTGCGCGAGGCGGAAGGACGGCATCGTGTGCGCCTGGCAGTGGGCAACGGGCTGCGGCCGTCCATCTGGGAGGAGTTCACGGAGCGCTTCGGCGTCCGCCAGATCGGCGAGTTCTACGGGGCCACCGAGTGCAACTGCAGCATCGCCAACATGGACGGGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000016775_MULTIEX2-3/8=1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0050123=AMP-binding=PU(12.8=69.2)
A:
PF0050123=AMP-binding=PU(24.4=79.7)
C2:
PF0050123=AMP-binding=FE(15.9=100)
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGCCTCTCTGGTGCTGTTAT
R:
TTCCCGTCCATGTTGGCGAT
Band lengths:
345-740
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development