DreEX0072436 @ danRer10
Exon Skipping
Gene
ENSDARG00000006240 | slc27a1a
Description
solute carrier family 27 (fatty acid transporter), member 1a [Source:ZFIN;Acc:ZDB-GENE-050320-112]
Coordinates
chr3:52290736-52308964:+
Coord C1 exon
chr3:52290736-52290903
Coord A exon
chr3:52303505-52303899
Coord C2 exon
chr3:52308800-52308964
Length
395 bp
Sequences
Splice sites
3' ss Seq
CTCTTTCTCTCGTCCATTAGTGG
3' ss Score
6.5
5' ss Seq
ACGGTGAGT
5' ss Score
11.45
Exon sequences
Seq C1 exon
GATGCACTATGTGGCGAGTGGCTCCCTGTCTTTGGGGTCCCTGGGCCTGCTCCGTCTGTTTGGGGCATCCTGGTCCTGGAGCCTGGCAGCAGGTCTGAGTGTTTATTTGGGGACTGGAGGCTGGCGGTACCTGTATGTGGTGGTTCGGACGGCTAAAAGGGACATCAA
Seq A exon
TGGTCTTTATGTGCTGCTGAGGGTTAAACTGGCACTATGGCATTATATGCGCAACCGAAACACCATACCCTCCATCTTTGCACAAACTGTGGCTCGGCACCCAGACAAGCCTGCGCTTGTGTATGAAGCCACTGGGGAGACGTGGACTTTCTCCCAGTTAGATCAAATCTCCAATGCTGTGGCCCACTGGGCACTGAGCCAAGGCTGGACCTCAGGAGATGTGGTGGCGCTGTTCATGGAGAGCAGACCCCTTCAGGTGGCACTCTGGCTGGGCCTGGCCAAAGTCGGTGTGGAAGCTGCACTCATTAACTTCAACCTGCGAAGGGATTCGCTCCTGCACTGCGTGGGTGTTTCAGCTTCCAGGGGAATTGTTTTTGGAGCAGAGCTTGCTGACG
Seq C2 exon
CTGTGTCTGAAGTGAGCCACTCCTTGAGTCAGACCATGGTGCGGTTCAGCACAGGAGACCTCAAACCAGACCTGATGGCCACTCTCAAGTGTCAGCCTCTTGACCCCATCCTGGCATCTGCCCCTCGACACCCACCATCCTGCACTGTGTCCAAGGGCTTCAATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000006240-'2-5,'2-3,5-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.008 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0050123=AMP-binding=PU(24.4=79.7)
C2:
PF0050123=AMP-binding=FE(12.6=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GATGCACTATGTGGCGAGTGG
R:
TTGAAGCCCTTGGACACAGTG
Band lengths:
331-726
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]