RnoEX0082067 @ rn6
Exon Skipping
Gene
ENSRNOG00000018170 | Slc27a1
Description
solute carrier family 27 member 1 [Source:RGD Symbol;Acc:620927]
Coordinates
chr16:20000946-20009354:+
Coord C1 exon
chr16:20000946-20001113
Coord A exon
chr16:20008690-20009084
Coord C2 exon
chr16:20009193-20009354
Length
395 bp
Sequences
Splice sites
3' ss Seq
CCCTGTCCCCATCTCTGCAGTGG
3' ss Score
8.66
5' ss Seq
CGGGTGAGG
5' ss Score
8.48
Exon sequences
Seq C1 exon
GATGCGGACTCCGGGAGCAGGAACAGCCTCTGTGGCCTCATTGGGGCTGCTTTGGCTTCTGGGACTTCCGTGGACCTGGAGCGCGGCGGCGGCGTTCGGTGTGTACGTGGGTAGCGGTGGCTGGCGCTTTCTGCGTATCGTCTGCAAGACGGCGAGGCGAGACCTCTT
Seq A exon
TGGCCTCTCTGTTCTGATCCGCGTGCGGCTAGAGCTACGACGACACCGGCGAGCAGGAGACACGATCCCACGCATCTTCCAGGCCGTGGCCCAGCGACAGCCGGAGCGCCTGGCGCTGGTAGATGCGAGTAGCGGTATCTGCTGGACCTTCGCACAGCTAGACACCTACTCCAATGCTGTGGCCAATCTGTTCCTCCAGCTGGGCTTTGCGCCAGGCGATGTGGTGGCTGTGTTCCTGGAAGGCCGGCCCGAGTTCGTGGGACTGTGGCTGGGCCTGGCCAAGGCCGGTGTAGTGGCTGCGCTTCTCAATGTCAACCTGAGGCGGGAGCCCCTTGCCTTCTGCTTGGGCACATCAGCTGCCAAGGCCCTCATTTATGGCGGGGAGATGGCAGCGG
Seq C2 exon
CGGTGGCGGAGGTGAGTGAGCAGCTGGGGAAGAGCCTGCTCAAGTTCTGCTCTGGAGATCTGGGGCCTGAGAGCGTCCTGCCTGACACGCAGCTTCTGGACCCCATGCTTGCTGAGGCGCCCACCACACCCCTGGCACAGGCCCCAGGCAAGGGCATGGATG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018170-'15-4,'15-3,16-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0050123=AMP-binding=PU(24.4=79.7)
C2:
PF0050123=AMP-binding=FE(12.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GACTCCGGGAGCAGGAACAG
R:
CATCCATGCCCTTGCCTG
Band lengths:
324-719
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]