GgaEX6015034 @ galGal3
Exon Skipping
Gene
ENSGALG00000004965 | SLC27A4
Description
NA
Coordinates
chr17:5608742-5610694:-
Coord C1 exon
chr17:5610501-5610694
Coord A exon
chr17:5609522-5609916
Coord C2 exon
chr17:5608742-5608900
Length
395 bp
Sequences
Splice sites
3' ss Seq
TGTTCCCTTTATTTTGGCAGCAC
3' ss Score
6.23
5' ss Seq
AAGGTGAGG
5' ss Score
9.16
Exon sequences
Seq C1 exon
ATGTTTATGTTTTCTCTCTCTCCACAGGCCAAGATGCTGCGTCTGGCTGCCTTCGCAGTACTGCTGCTGTTCTTCAGGGTCAGCCTGGAGCTGTCCTGGGCCCAGGCCATCCCTGCTCTTTTCATCTTCTACCTGGGATCAGGGGGATGGGACTTCTTCCTCATATTCCTCAAGACAGTACGAAGGGATGTCAC
Seq A exon
CACGGGGCTGGTCCTGCTGCGGGTGAAGTGGCAGGTGTGGAGGCACGTGAGGGAGAAGAACACGATCGCCAAGATCTTCCAGAGGACTGCGAGCAAGTGTCCAGAGAAAACAGCACTGATCTTCCAAGGCACGGGCGAGAGCTGGACCTTCCGGCAGCTGGATGAGTACTCCAACCAAGTGGCCAATTTCTTCCACGGCCAAGGCTTCCGCTCCGGTGACGTGGTGGCTCTGTTCATGGAGTCCCGCAATCAGTACGTGGGGCTGTGGCTCGGCTTGGCCAAGATCGGGGTGGAGACGGCCCTGGTGAATTCCAACCTACGCATGGAGGCCTTGCTGCACTGCATCACCATCTCCAACTCCAAGGCTGTGGTTTTTGGAGTGGAAATGATGGAAG
Seq C2 exon
CTATGAAGGAGGTGCAGTCCTCCATGGAGAAGTCTGTCCATCTCTTCTGGTCAGGAGAAGGAAGCCCTGAGTCCGCACTTTCTGGTGCAAAGCACCTGGATCCCCTCCTGCAGACAGCTCTTCGACAGCAGCCAGATCCCCCTGAGAAGGGCTTTCTCG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000004965-'0-1,'0-0,3-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.019
Domain overlap (PFAM):
C1:
NO
A:
PF0050123=AMP-binding=PU(24.5=79.7)
C2:
PF0050123=AMP-binding=FE(12.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTTATGTTTTCTCTCTCTCCACA
R:
CTTCTCAGGGGGATCTGGCTG
Band lengths:
342-737
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]