DreEX0072462 @ danRer10
Exon Skipping
Gene
ENSDARG00000017047 | slc27a4
Description
solute carrier family 27 (fatty acid transporter), member 4 [Source:ZFIN;Acc:ZDB-GENE-050417-248]
Coordinates
chr10:10789440-10806454:+
Coord C1 exon
chr10:10789440-10789601
Coord A exon
chr10:10800151-10800545
Coord C2 exon
chr10:10806296-10806454
Length
395 bp
Sequences
Splice sites
3' ss Seq
TCTACCCCCTTTTTTTACAGTGC
3' ss Score
9.66
5' ss Seq
AAGGTGAGA
5' ss Score
8.68
Exon sequences
Seq C1 exon
GATGTTGCGGTTGGCGTGTGCCACGGCCCTTCTCTTTGTTCTCCGGCTGTTCATCGGCTTACCTTGGTGGCAGGTTCTACCGTCCATTCTCATTTTCTACGTGGGTTCCGGAGGATGGAAGTCCCTCTATGTGTTTTCAAAGACTATATACCGGGACTTGCA
Seq A exon
TGCAGCCAGTGTATTGCTGAGGGTAAAACTGAATGTCAAGAAACACCTACGTGAACGCAACACAGTGCCCAAACTGTTTGCCAAGTCCGTCAAGAAGTATGGAAACAAGACAGCTCTGATTTTCGAAGGAACGGATGAGAAATGGAGCTTCAAGGAGCTCGATGAGTACTCCAATCGCGTGGCCAACTTTTTACTCCAGCAAGGCTTCAGGGAGGGCGATGTGGTGGCTCTGTTCATGGAGAACCGCCATCAGTATGTTGGCCTCTGGCTGGGCATGGCGAAGATCGGCGTGGAGGCAGCACTTATCAACTTCAACCTGAGACTAGAGGCTCTGGTTCACTGTGTCAACATCTCCAGCGCCAAAGCTGTGGTGTTCGGCAGTGAGCTAACAGAAG
Seq C2 exon
CAATGTGTGAGGTGCACAGCTCCATGGGAAAGACTGTTAAGCTCTTCGTCTCTGGTGAATGGGACCCTAAGCGGGTTCCTGTAGGAACAGAGCATCTAGACCCGCTCCTGGAGACCACTAGTACAATCCAGCCCAAACAACCAGATCGCAGCTTCACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000017047-'3-3,'3-1,4-3
Average complexity
S
Mappability confidence:
88%=100=75%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.065
Domain overlap (PFAM):
C1:
NO
A:
PF0050123=AMP-binding=PU(24.5=79.7)
C2:
PF0050123=AMP-binding=FE(12.2=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCACGGCCCTTCTCTTTG
R:
CTGTGAAGCTGCGATCTGGTT
Band lengths:
302-697
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]