RnoEX0082090 @ rn6
Exon Skipping
Gene
ENSRNOG00000014369 | Slc27a4
Description
solute carrier family 27 member 4 [Source:RGD Symbol;Acc:1307383]
Coordinates
chr3:8365472-8368856:+
Coord C1 exon
chr3:8365472-8365638
Coord A exon
chr3:8366930-8367324
Coord C2 exon
chr3:8368698-8368856
Length
395 bp
Sequences
Splice sites
3' ss Seq
ACTTCTTTGCTCCCACACAGCGG
3' ss Score
8.33
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GCCACAATGCTGCTTGGAGCATCTCTGGTGGGGGCGCTGCTGTTCTCCAAGCTGGTGCTGAAGCTACCCTGGACCCAGGTGGGATTCTCCTTGTTGCTCCTGTACTTGGGGTCTGGTGGCTGGCGTTTCATCCGGGTCTTCATCAAGACGGTCAGGAGAGATGTCTT
Seq A exon
CGGCGGCATGGTGCTCCTGAAGGTGAAGACCAAGGTCCGACGGTACCTTCAGGAGCGGAAGACAGTGCCCTTGCTGTTTGCCTCAGTGGTTCGGCGCCACCCCGACAAGACAGCCCTGATTTTCGAGGGCACGAATACTCACTGGACCTTCCGCCAGCTGGATGACTACTCCAGCAGTGTGGCCAACTTCCTGCAGGCCCGGGGCCTGGTCTCAGGCAATGTAGTTGCTCTCTTTATGGAAAACCGTAACGAGTTTGTGGGTCTGTGGCTAGGCATGGCCAAGCTGGGCGTGGAGGCGGCACTCATCAACACCAACCTTAGGCGGGATGCCCTGCGCCACTGCCTTGACACCTCAAAGGCACGAGCCCTCATCTTTGGCAGCGAGATGGCCTCAG
Seq C2 exon
CTGTCTATGAGATCCAGGCTATCCTGGACCCCACACTCACCCTCTTCTGCTCTGGTTCCTGGGAGCCCAGCACCGTGCCTGCCAACACAGAGCATCTGGACCCTCTGCTGGAAGATGCCCCGAAGCACCTGCCCAGCATCCCAGACAAGGGTTTTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000014369-'4-6,'4-4,6-6
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.028
Domain overlap (PFAM):
C1:
NO
A:
PF0050123=AMP-binding=PU(24.5=79.7)
C2:
PF0050123=AMP-binding=FE(12.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCCACAATGCTGCTTGGAGC
R:
CTTGTCTGGGATGCTGGGC
Band lengths:
316-711
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]