MmuEX6100104 @ mm9
Exon Skipping
Gene
ENSMUSG00000059316 | Slc27a4
Description
solute carrier family 27 (fatty acid transporter), member 4 [Source:MGI Symbol;Acc:MGI:1347347]
Coordinates
chr2:29659680-29663034:+
Coord C1 exon
chr2:29659680-29659846
Coord A exon
chr2:29661136-29661530
Coord C2 exon
chr2:29662876-29663034
Length
395 bp
Sequences
Splice sites
3' ss Seq
GCTTCTTTCCTCCCACACAGTGG
3' ss Score
8.18
5' ss Seq
CAGGTGAGC
5' ss Score
9.6
Exon sequences
Seq C1 exon
GTCACAATGCTACTTGGAGCATCTCTGGTGGGGGCGCTACTGTTCTCCAAGCTAGTGCTGAAGCTGCCCTGGACCCAGGTGGGATTCTCCCTGTTGCTCCTGTACTTGGGGTCTGGTGGCTGGCGTTTCATCCGGGTCTTCATCAAGACGGTCAGGAGAGATATCTT
Seq A exon
TGGTGGCATGGTGCTCCTGAAGGTGAAGACCAAGGTGCGACGGTACCTTCAGGAGCGGAAGACGGTGCCCCTGCTGTTTGCTTCAATGGTACAGCGCCACCCGGACAAGACAGCCCTGATTTTCGAGGGCACAGACACTCACTGGACCTTCCGCCAGCTGGATGAGTACTCCAGTAGTGTGGCCAACTTCCTGCAGGCCCGGGGCCTGGCCTCAGGCAATGTAGTTGCCCTCTTTATGGAAAACCGCAATGAGTTTGTGGGTCTGTGGCTAGGCATGGCCAAGCTGGGCGTGGAGGCGGCTCTCATCAACACCAACCTTAGGCGGGATGCCCTGCGCCACTGTCTTGACACCTCAAAGGCACGAGCTCTCATCTTTGGCAGTGAGATGGCCTCAG
Seq C2 exon
CTATCTGTGAGATCCATGCTAGCCTGGAGCCCACACTCAGCCTCTTCTGCTCTGGATCCTGGGAGCCCAGCACAGTGCCCGTCAGCACAGAGCATCTGGACCCTCTTCTGGAAGATGCCCCGAAGCACCTGCCCAGTCACCCAGACAAGGGTTTTACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000059316-'1-3,'1-1,2-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF0050123=AMP-binding=PU(24.5=79.7)
C2:
PF0050123=AMP-binding=FE(12.2=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCACAATGCTACTTGGAGCA
R:
CCCTTGTCTGGGTGACTGGG
Band lengths:
318-713
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: