BtaEX0033331 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000014975 | SLC4A3
Description
solute carrier family 4 (anion exchanger), member 3 [Source:HGNC Symbol;Acc:HGNC:11029]
Coordinates
chr2:108273518-108274541:+
Coord C1 exon
chr2:108273518-108273680
Coord A exon
chr2:108274093-108274194
Coord C2 exon
chr2:108274267-108274541
Length
102 bp
Sequences
Splice sites
3' ss Seq
TCCATCCCCCCCTCTACCAGGCC
3' ss Score
9.35
5' ss Seq
AAGGTGTGT
5' ss Score
6.64
Exon sequences
Seq C1 exon
GTCCGGGTGCCCTTGGAGGAGCCACCTCTGAGTCCAGACATGGAGGAGGATGATGACTTGGGCAAGACCTTGGCTGTGAGCAGGTTTGGGGACCTCATCAGCAAGCCCCCGGCCTGGGACCCCGAGAAGCCCAGCCGCAGCTACAGCGAGCGGGACTTTGAGT
Seq A exon
GCCTTACCCATGACAGGCTGTGGATACAGGTGTTGGGGGGAGCCTGACTCTGGAGGAAGGACCAGGGTGCCCTTCTTTGTGGCCTTGAGCTAGAATAATAAG
Seq C2 exon
TTCACCGACACACATCCCACCACACCCACCACCCGCTCTCGGCGCGCCTGCCTCCACCCCACAAGCTGCGGCGACTGCCCCCCACCTCTGCTCGGCAGACCAGGAGGAAGAGGAAGAAGGAGAAAACCTCTGCTCCCCCCTCCGAGGGGACTCCTCCCATCCAGGAGGAGGGGGGAGCCGGAGTGGACGAGGAGGAGGAGGAAGAGGAAGAAGAGGGGGAATCTGAGGCTGAACCTGCAGAGCCCCCACCCCCAGGGTCCCCAACAAAAGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000014975-'3-2,'3-1,4-2
Average complexity
C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.891 A=0.000 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Inclusion Isoform:
ENSBTAT00000019936fB6516
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGGATGATGACTTGGGCA
R:
GGGGAGCAGAGGTTTTCTCCT
Band lengths:
258-360
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development