HsaEX0059801 @ hg19
Exon Skipping
Gene
ENSG00000114923 | SLC4A3
Description
solute carrier family 4, anion exchanger, member 3 [Source:HGNC Symbol;Acc:11029]
Coordinates
chr2:220493127-220494143:+
Coord C1 exon
chr2:220493127-220493292
Coord A exon
chr2:220493698-220493793
Coord C2 exon
chr2:220493866-220494143
Length
96 bp
Sequences
Splice sites
3' ss Seq
CTCTCCTCCCACTCCACCAGACC
3' ss Score
8.29
5' ss Seq
AAGGTGTGT
5' ss Score
6.64
Exon sequences
Seq C1 exon
GTCCGGGTGCCCTTGGAGGAGCCCCCTCTAAGTCCAGACGTGGAGGAGGAGGACGATGACTTGGGCAAGACCTTGGCTGTGAGCAGGTTTGGGGACCTCATCAGCAAGCCCCCGGCCTGGGACCCCGAGAAGCCCAGCCGCAGCTACAGCGAGCGGGACTTTGAGT
Seq A exon
ACCTCATCAATGACAGGCACGTGGACACAGGTGTTGGGGGGTCATGGCCCTGGAGGAAGGACTAGGGTGCCCTTGTTTGCGGCCTTGAGCTGGAAG
Seq C2 exon
TTCACCGGCACACATCCCACCACACCCACCACCCGCTCTCAGCGCGCCTGCCTCCACCCCACAAGCTGCGGCGGCTGCCCCCCACCTCTGCCCGGCACACCAGGAGAAAGAGGAAGAAGGAGAAAACCTCTGCTCCTCCCTCCGAGGGGACCCCTCCCATCCAGGAGGAGGGGGGAGCTGGAGTGGATGAGGAAGAGGAGGAAGAGGAGGAAGAGGAAGGAGAATCTGAGGCAGAACCTGTGGAGCCCCCCCACTCAGGGACCCCACAGAAGGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000114923-'3-9,'3-8,5-9
Average complexity
C2
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.969 A=0.524 C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Conservation
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGCCCCCTCTAAGTCCAGAC
R:
TGGGTGTGGTGGGATGTGT
Band lengths:
176-272
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- The Cancer Genome Atlas (TCGA)
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)