HsaALTD0006037-1/2 @ hg19
Alternative 5'ss
Gene
ENSG00000114923 | SLC4A3
Description
solute carrier family 4, anion exchanger, member 3 [Source:HGNC Symbol;Acc:11029]
Coordinates
chr2:220493238-220494143:+
Coord C1 exon
chr2:220493238-220493292
Coord A exon
NA
Coord C2 exon
chr2:220493866-220494143
Length
0 bp
Sequences
Splice sites
5' ss Seq
AGTGTGGGT
5' ss Score
0.29
3' ss Seq
CGGATCTCCTGCACCCCCAGTTC
3' ss Score
6.01
Exon sequences
Seq C1 exon
CCGGCCTGGGACCCCGAGAAGCCCAGCCGCAGCTACAGCGAGCGGGACTTTGAGT
Seq A exon
NA
Seq C2 exon
TTCACCGGCACACATCCCACCACACCCACCACCCGCTCTCAGCGCGCCTGCCTCCACCCCACAAGCTGCGGCGGCTGCCCCCCACCTCTGCCCGGCACACCAGGAGAAAGAGGAAGAAGGAGAAAACCTCTGCTCCTCCCTCCGAGGGGACCCCTCCCATCCAGGAGGAGGGGGGAGCTGGAGTGGATGAGGAAGAGGAGGAAGAGGAGGAAGAGGAAGGAGAATCTGAGGCAGAACCTGTGGAGCCCCCCCACTCAGGGACCCCACAGAAGGCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000114923-3-9,4-9-1/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.969 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTACAGCGAGCGGGACTTTG
R:
CCTTCCTCTTCCTCCTCTTCCT
Band lengths:
243-439
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)