GgaALTD1021487-2/2 @ galGal4
Alternative 5'ss
Gene
ENSGALG00000011224 | SLC4A3
Description
solute carrier family 4 (anion exchanger), member 3 [Source:HGNC Symbol;Acc:HGNC:11029]
Coordinates
chr7:21521261-21525046:-
Coord C1 exon
chr7:21524913-21525046
Coord A exon
chr7:21524895-21524912
Coord C2 exon
chr7:21521261-21521598
Length
18 bp
Sequences
Splice sites
5' ss Seq
AATGTATGT
5' ss Score
5.87
3' ss Seq
ACTCTCTTTTTCTCTCTCAGTCC
3' ss Score
10.6
Exon sequences
Seq C1 exon
AGATCGTGCAGAAAAAGCCTCTCCTGGTGCCGAGGACGATGAGGACTTGGATAAGACTTTATCAATCGAGAGATTTGGGGACCTGATAAGCAAGTCAGCATCAAGCAATCTGGAGAAGCAGAGACGCTGCTACA
Seq A exon
GTGAGAGAGATTTTGAAT
Seq C2 exon
TCCACCGCCAAACCTCGCACCACATCCATCATCCCCTTTCCACTCACCTCCCTTCTGCCCTCAAGTTCCAAAAGAGGCCCCCCCGTGCCGGCAGGAGGAAAAAAAGAAGAAGGAAAAAGAAGAAAACCTCAGTACCCCCCTCAGAGGTCACCCCTACCATCCAAGAAGTGGACGAGGAAGGAGGAGAAGAGGAGGAAGAAGAGGAAGAAGAAGAAGAGGAGGAAGAAGGAGAGTCTGAGACAGAGGAAGTTCAGGAGAAGGAGGTCTTTGTAGAGTTTGAGGGCGAAGATCGTGGGAAGGACACATCCCCTAAGCTGGAGCCCCCAAGCAAACCGAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011224-4-5,5-5-2/2
Average complexity
Alt5
Mappability confidence:
NA
Protein Impact
Protein isoform when splice site is used (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.981 A=NA C2=1.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATCTGGAGAAGCAGAGACGCT
R:
GGGGGCCTCTTTTGGAACTTG
Band lengths:
109-127
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]