BtaEX0033357 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017950 | SLC4A8
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 8 [Source:HGNC Symbol;Acc:HGNC:11034]
Coordinates
chr5:28499198-28505223:-
Coord C1 exon
chr5:28505123-28505223
Coord A exon
chr5:28500809-28500865
Coord C2 exon
chr5:28499198-28499372
Length
57 bp
Sequences
Splice sites
3' ss Seq
TTTATTTTTATGTTTTCTAGATT
3' ss Score
9.26
5' ss Seq
CAGGTATCT
5' ss Score
7.33
Exon sequences
Seq C1 exon
GAGAAAAGGAAAATGCCTGGAGTTCCAAATGGGAACGTTTGCCACATAGAACCGGAGCCACATGGGGGCCACAGCGGGCCAGAGCTTCAGCGCACTGGGCG
Seq A exon
ATTATTCTAAGCCAAATCACCAGTTACATGTCATTTCACCTGTAACTACTTGAGCAG
Seq C2 exon
GCTTTTTGGGGGCTTGGTTCTGGACATCAAGCGGAAGGCCCCCTGGTACTGGAGCGACTACCGGGATGCCCTCAGCTTACAGTGTTTGGCCTCCTTTCTGTTCCTGTACTGTGCCTGCATGTCACCTGTCATCACTTTTGGGGGATTGCTTGGAGAAGCCACCGAGGGGCGCATA
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017950-'17-16,'17-15,18-16
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.843 A=1.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=PU(1.2=17.6)
A:
NO
C2:
PF0095516=HCO3_cotransp=FE(11.3=100)
Main Inclusion Isoform:
ENSBTAT00000023868fB6525
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Rat
(rn6)
No conservation detected
Chicken
(galGal4)
No conservation detected
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTTGCCACATAGAACCGGAGC
R:
CACTGTAAGCTGAGGGCATCC
Band lengths:
148-205
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development