BtaEX0033361 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000017950 | SLC4A8
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 8 [Source:HGNC Symbol;Acc:HGNC:11034]
Coordinates
chr5:28491386-28505223:-
Coord C1 exon
chr5:28505123-28505223
Coord A exon
chr5:28499198-28499372
Coord C2 exon
chr5:28491386-28491491
Length
175 bp
Sequences
Splice sites
3' ss Seq
TGTCTGCTGTGTTTCTGCAGGCT
3' ss Score
11.43
5' ss Seq
ATAGTAAGA
5' ss Score
4.74
Exon sequences
Seq C1 exon
GAGAAAAGGAAAATGCCTGGAGTTCCAAATGGGAACGTTTGCCACATAGAACCGGAGCCACATGGGGGCCACAGCGGGCCAGAGCTTCAGCGCACTGGGCG
Seq A exon
GCTTTTTGGGGGCTTGGTTCTGGACATCAAGCGGAAGGCCCCCTGGTACTGGAGCGACTACCGGGATGCCCTCAGCTTACAGTGTTTGGCCTCCTTTCTGTTCCTGTACTGTGCCTGCATGTCACCTGTCATCACTTTTGGGGGATTGCTTGGAGAAGCCACCGAGGGGCGCATA
Seq C2 exon
CTGCAGGTGCACCCTCCCAGAGAATCCGAACAATCACACTTTGCAGTACTGGAAGGACCACAACATCGTGACAACAGAAGTGCACTGGGCCAACCTGACTGTTAGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000017950_MULTIEX1-1/3=C1-C2
Average complexity
C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.843 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=PU(1.2=17.6)
A:
PF0095516=HCO3_cotransp=FE(11.3=100)
C2:
PF0095516=HCO3_cotransp=FE(10.8=100)
Main Skipping Isoform:
ENSBTAT00000023868fB6525
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAGGAAAATGCCTGGAGTTCCA
R:
ACTAACAGTCAGGTTGGCCCA
Band lengths:
202-377
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development