GgaEX7011993 @ galGal4
Exon Skipping
Gene
ENSGALG00000008423 | SLC4A8
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 8 [Source:HGNC Symbol;Acc:HGNC:11034]
Coordinates
chrLGE22C19W28_E50C23:862002-863327:-
Coord C1 exon
chrLGE22C19W28_E50C23:863236-863327
Coord A exon
chrLGE22C19W28_E50C23:862422-862596
Coord C2 exon
chrLGE22C19W28_E50C23:862002-862135
Length
175 bp
Sequences
Splice sites
3' ss Seq
TTTTCCTGTCCCTCCTCCAGGCT
3' ss Score
11.56
5' ss Seq
ATAGTGAGT
5' ss Score
6.97
Exon sequences
Seq C1 exon
AAAAAAAGGAAGATGCCCGGAGCTCTGGATGACAATGCTTCTCACAGAAAGCCTGAAAAACACAGCGGCCCTGAACTGGAGAGGACAGGAAG
Seq A exon
GCTCTTTGGAGGTTTGATCCTGGATGTGAAGCGGAAAGCGCCGTGGTTCTGGAGCGACTTTCGGGATGCGCTGAGTCTGCAGTGCCTGGCATCCTTCCTCTTCCTCTACTGCGCCTGCATGTCCCCTGTCATCACCTTCGGGGGGCTGTTGGGGGAGGCGACTGATGGCCACATA
Seq C2 exon
AGCGCCATGGAGTCACTGCTGGGCGCGTCCATGACTGGCGTTGTGTATTCCCTCTTTGCTGGCCAACCTCTCACCATCCTTGGCAGCACTGGCCCTGTTCTCGTGTTCGAGAAGATCCTCTACAAGTTCTGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008423-'13-15,'13-14,14-15=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.839 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=PU(1.2=19.4)
A:
PF0095516=HCO3_cotransp=FE(11.3=100)
C2:
PF0095516=HCO3_cotransp=FE(18.0=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAAAGGAAGATGCCCGGAGC
R:
GCAGAACTTGTAGAGGATCTTCTCG
Band lengths:
222-397
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]