RnoEX0082880 @ rn6
Exon Skipping
Gene
ENSRNOG00000028879 | Slc4a8
Description
solute carrier family 4 member 8 [Source:RGD Symbol;Acc:735164]
Coordinates
chr7:142437495-142443002:+
Coord C1 exon
chr7:142437495-142437595
Coord A exon
chr7:142442165-142442339
Coord C2 exon
chr7:142442869-142443002
Length
175 bp
Sequences
Splice sites
3' ss Seq
CTGTCTGCGTATCTCTGCAGGCT
3' ss Score
9.75
5' ss Seq
ATAGTAAGA
5' ss Score
4.74
Exon sequences
Seq C1 exon
GAAAAAAGGAAGATGCCTGGCGTTCCAAACGGAAACATTTGCCACGTAGAACCTGAGCCACATGGGGGACACAGCGGGCCGGAACTTGAGCGGACGGGGCG
Seq A exon
GCTGTTTGGGGGCTTGGTGCTGGATGTCAAACGGAAGGCTCCCTGGTACTGGAGTGACTACCGGGATGCTCTCAGCTTACAGTGTCTGGCCTCCTTCCTGTTCCTGTACTGTGCCTGCATGTCGCCTGTTATCACCTTCGGGGGACTGCTGGGAGAAGCCACGGAAGGACGCATA
Seq C2 exon
AGTGCAATCGAATCGTTGTTTGGAGCCTCCATGACGGGGATTGCCTACTCTCTGTTTGCTGGGCAGCCTCTCACCATCCTGGGAAGCACGGGCCCTGTGCTGGTGTTTGAAAAGATTTTGTTCAAATTCTGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000028879_CASSETTE2
Average complexity
S*
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.794 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=PU(1.2=17.6)
A:
PF0095516=HCO3_cotransp=FE(11.3=100)
C2:
PF0095516=HCO3_cotransp=FE(8.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAAGGAAGATGCCTGGCGTT
R:
TGCAGAATTTGAACAAAATCTTTTCA
Band lengths:
231-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]