HsaEX0059858 @ hg38
Exon Skipping
Gene
ENSG00000050438 | SLC4A8
Description
solute carrier family 4 member 8 [Source:HGNC Symbol;Acc:HGNC:11034]
Coordinates
chr12:51463614-51470525:+
Coord C1 exon
chr12:51463614-51463714
Coord A exon
chr12:51469614-51469788
Coord C2 exon
chr12:51470392-51470525
Length
175 bp
Sequences
Splice sites
3' ss Seq
TGTCTGTTGTGTTTCCACAGGCT
3' ss Score
11.89
5' ss Seq
ATAGTAAGG
5' ss Score
4.33
Exon sequences
Seq C1 exon
GAGAAAAGGAAAATGCCTGGAGTTCCAAATGGAAATGTTTGCCACATAGAACAGGAACCACATGGGGGTCACAGTGGGCCAGAACTTCAGCGCACTGGGCG
Seq A exon
GCTATTTGGGGGCTTGGTGCTGGACATCAAGCGGAAGGCCCCCTGGTACTGGAGCGACTACCGAGATGCACTCAGCTTACAGTGTTTGGCTTCCTTTCTGTTCCTGTACTGTGCCTGCATGTCACCTGTCATCACCTTTGGGGGACTGCTTGGAGAAGCCACTGAGGGACGCATA
Seq C2 exon
AGTGCAATTGAATCCTTGTTTGGAGCTTCCATGACTGGGATTGCTTATTCCTTGTTTGCGGGACAGGCTCTCACCATCCTGGGAAGTACTGGACCAGTGCTTGTGTTTGAAAAGATTTTGTTCAAATTCTGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000050438-'29-45,'29-44,36-45
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.812 A=0.006 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=PU(1.2=17.6)
A:
PF0095516=HCO3_cotransp=FE(11.3=100)
C2:
PF0095516=HCO3_cotransp=FE(13.8=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAAAAGGAAAATGCCTGGAGT
R:
TGCAGAATTTGAACAAAATCTTTTCA
Band lengths:
234-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
- Pre-implantation embryo development