DreEX6023332 @ danRer10
Exon Skipping
Gene
ENSDARG00000015531 | slc4a8
Description
solute carrier family 4, sodium bicarbonate cotransporter, member 8 [Source:ZFIN;Acc:ZDB-GENE-131119-88]
Coordinates
chr6:40388994-40389833:+
Coord C1 exon
chr6:40388994-40389094
Coord A exon
chr6:40389328-40389502
Coord C2 exon
chr6:40389700-40389833
Length
175 bp
Sequences
Splice sites
3' ss Seq
CTTTCCCAATCTCACTGTAGGCT
3' ss Score
9.49
5' ss Seq
ATTGTGAGT
5' ss Score
7.35
Exon sequences
Seq C1 exon
GAGAAGAGAAAAATGCCGGGAGTGCCGAATGGTACAGCTGTTACTGTTGAGGAAGAGCTACACGCAGAACACCATGGGCCGGAACTGCAGAGAACAGGAAG
Seq A exon
GCTGTTTGGAGGATTGATTTTGGATTTAAAGAGGAAAGCTCCATATTATCTGAGTGACTTTAAAGACGGCCTGACTCTGCAGTGTGTAGCTTCTTTTCTTTTCCTGTACTGTGCCTGTATGTCACCTGTAATCACATTTGGAGGACTTCTGGGAGAGGCAACAGAAGGACAAATT
Seq C2 exon
AGTGCTATTGAGTCTCTTTTAGGAGCATCTATGACTGGAGTAGCATACTCTCTGTTTGCTGGACAGCCATTAACTATTCTGGGCAGCACTGGACCCGTCCTGGTCTTCGAAAAGATTCTCTTCAAGTTCTGCAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000015531-'11-12,'11-11,12-12=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.706 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0095516=HCO3_cotransp=PU(1.2=17.6)
A:
PF0095516=HCO3_cotransp=FE(11.3=100)
C2:
PF0095516=HCO3_cotransp=FE(8.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAAGAGAAAAATGCCGGGAGT
R:
TGCAGAACTTGAAGAGAATCTTTTCG
Band lengths:
234-409
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]